$ allcools profile-allc -h
usage: allcools profile-allc [-h] --allc_path ALLC_PATH [--keep_n]
[--n_rows N_ROWS] [--output_path OUTPUT_PATH]
optional arguments:
-h, --help show this help message and exit
--keep_n Whether to keep context that contain N, such as CCN.
This is usually very rare and need to be dropped.
(default: True)
--n_rows N_ROWS Number of rows to calculate the profile from. The
default number is usually sufficient to get pretty
precise assumption. (default: 1000000)
--output_path OUTPUT_PATH
Path of the output file. If None, will save the
profile next to input ALLC file. (default: None)
required arguments:
--allc_path ALLC_PATH
Path to 1 ALLC file (default: None)
