Module Contents
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activity_score_atac_mcg(all_values)[source]
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scan_single_bw(bw_path, bed, value_type='sum')[source]
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preprocess_bed(input_bed, blacklist_path, chrom_sizes, temp_dir)[source]
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class ABCModel(cool_url, enhancer_bed_path, tss_bed_path, output_prefix, epi_mark: dict, calculation_mode, blacklist_path=None, enhancer_size=500, promoter_size=500, max_dist=5000000, min_score_cutoff=0.02, balance=False, cleanup=True, cpu=1)[source]
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_enhancer_bed(self)[source]
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_tss_bed(self)[source]
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_tss_bin(self)[source]
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_promoter_bed(self)[source]
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_promoter_and_enhancer_bed(self)[source]
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_standard_bed(self, bed, name, slop)[source]
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_single_chrom_activity_score(self, chrom_pe_bed)[source]
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_single_chrom_abc_score(self, chrom_mat, chrom_tss_bin, chrom_pe_bed)[source]
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calculate(self, balance=False, cpu=1)[source]
