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ALLCools.count_matrix.h5ad

ALLCools.count_matrix.h5ad

Module Contents

_bin_count_table_to_csr_npz(bin_count_tables, bin_size, chrom_size_path, output_prefix, compression=True)[source]
_csr_matrix_to_anndata(matrix_paths, output_path, obs_names, chrom_size_path, bin_size, mc_type, count_type, step_size, strandness, compression=None, compression_opts=None)[source]
aggregate_region_count_to_paired_anndata(count_tables, output_prefix, chrom_size_path, bin_size, mc_type, count_type, strandness, compression='gzip', file_uids=None, max_obj=3072, cpu=3)[source]
_transform_single_h5ad(adata_path, output_path, chrom_size_path, bin_size, step_size, window_size, compression)[source]

Resize non-overlap chrom bin count adata

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