ALLCools.dmr.call_dmr
Contents
ALLCools.dmr.call_dmr
¶
Module Contents¶
- _call_dmr_single_chrom(dms_dir, output_dir, chrom, p_value_cutoff=0.001, frac_delta_cutoff=0.2, max_dist=250, residual_quantile=0.6, corr_cutoff=0.3, dms_ratio=0.8)[source]¶
Call DMR for single chromosome, see call_dmr for doc
- call_dmr(output_dir, replicate_label=None, p_value_cutoff=0.001, frac_delta_cutoff=0.2, max_dist=250, residual_quantile=0.6, corr_cutoff=0.3, dms_ratio=0.8, cpu=1, chrom=None)[source]¶
Call DMR from DMS results.
- Parameters
output_dir –
replicate_label –
p_value_cutoff –
frac_delta_cutoff –
max_dist –
residual_quantile –
corr_cutoff –
dms_ratio –
cpu –
chrom –