ALLCools.plot.genome_track.HiCMatrixCoolTrack
Contents
ALLCools.plot.genome_track.HiCMatrixCoolTrack
¶
Module Contents¶
- class HiCMatrixCoolTrack(*args, **kwargs)[source]¶
Bases:
pygenometracks.tracks.GenomeTrack.GenomeTrack
The GenomeTrack object is a holder for all tracks that are to be plotted. For example, to plot a bedgraph file a new class that extends GenomeTrack should be created.
It is expected that all GenomeTrack objects have a plot method.
- STRING_PROPERTIES = ['file', 'file_type', 'overlay_previous', 'orientation', 'transform', 'title', 'colormap'][source]¶
- plot_y_axis(self, cbar_ax, plot_ax)[source]¶
Plot the scale of the y axis with respect to the plot_axis :param ax: axis to use to plot the scale :param plot_axis: the reference axis to get the max and min. :param transform: what was the transformation of the data :param log_pseudocount: :param y_axis: ‘tranformed’ or ‘original’ :param only_at_ticks: False: only min_max are diplayed
True: only ticks values are displayed
Returns: