ALLCools.clustering.pvclust

Module Contents

install_r_package(name)[source]
_hclust_to_scipy_linkage(result, plot=True)[source]

Turn R hclust result obj into scipy linkage matrix format

class Dendrogram(nboot=1000, method_dist='correlation', method_hclust='average', n_jobs=- 1)[source]
fit(self, data)[source]
Parameters

data – The data is in obs-by-var form, row is obs.

save(self, output_path)[source]