ALLCools.mcds.correlation
Contents
ALLCools.mcds.correlation
¶
See here https://stackoverflow.com/questions/52371329/fast-spearman-correlation-between-two-pandas-dataframes
Calculate correlation between two matrix, row by row
Module Contents¶
- corr(adata_a, adata_b, max_dist, cpu=1, method='pearson', shuffle_sample=None, calculate_n=None)[source]¶
- _verify_correlation_da(data: xarray.DataArray, region_dim, pos)[source]¶
- region_correlation(data_a, data_b, sample_mch, sample_mcg, region_dim_a=None, region_dim_b=None, pos_a=None, pos_b=None, method='pearson', max_dist=1000000, cpu=1, null='sample', null_n=100000, chroms=None)[source]¶
- _select_corr_cutoff(true: numpy.ndarray, null: numpy.ndarray, alpha=0.05, direction='+')[source]¶