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ALLCools.clustering.doublets.scrublet

ALLCools.clustering.doublets.scrublet

Module Contents

class MethylScrublet(sim_doublet_ratio=2.0, n_neighbors=None, expected_doublet_rate=0.1, stdev_doublet_rate=0.02, metric='euclidean', random_state=0, n_jobs=- 1)[source]
fit(self, mc, cov, clusters=None, batches=None)[source]
simulate_doublets(self)[source]

Simulate doublets by adding the counts of random observed cell pairs.

pca(self)[source]
get_knn_graph(self, data)[source]
calculate_doublet_scores(self)[source]
call_doublets(self, threshold=None)[source]
plot(self)[source]
_plot_cluster_dist(self)[source]

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