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ALLCools.dmr.call_dms

ALLCools.dmr.call_dms

Module Contents

_read_single_allc(path, region)[source]
_make_count_table(path_list, region)[source]
_perform_rms_batch(output_dir, allc_paths, samples, region, max_row_count, n_permute, min_pvalue)[source]
call_dms(output_dir, allc_paths, samples, chrom_size_path, cpu=1, max_row_count=50, n_permute=3000, min_pvalue=0.01, region=None)[source]

Call DMS from multiple ALLC files

Parameters

  • output_dir –

  • allc_paths –

  • samples –

  • chrom_size_path –

  • cpu –

  • max_row_count –

  • n_permute –

  • min_pvalue –

  • region –

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