MERFISHing

This is a small package that provides customized analysis on MERFISH data generated by Vizgen MERSCOPE machine.

Main features:

• Prepare archive of MERFISH experiment files

• Provide an entry point to analyze MERFISH data

• Analyze smFISH data and call spots with the bigfish package

• Redo cell segmentation with the cellpose package

User Guide

• 1. Before Start
• 2. Archive MERFISH Experiment
• 3. MERFISH Experiment Region Entry Point
• 4. smFISH Spot Detection
• 5. Cellpose Segmentation